Predict a dimer structure
PREDDIMER reconstructs putative dimer conformations for given sequences of transmembrane protein fragments, which are considered as ideal α-helices. Predicted dimer conformations are ranked according to the scoring function (see manual for details). Below, input sequences of an interest, specify program options and launch calculations.
If you already have launched prediction and remember your unique task ID, go to the results page.
Build cylindrical maps of your dimer structure
In this mode you may upload your own structure of two interacting α-helices to build a cylindrical map of hydrophobic properties and mark an interface on the map. You have to choose two separate PDB files (one for each helix) and upload them to the server.
You are responsible that both PDB contain α-helices and these helices interact each other.